Stage disagrees with a derivation#

This page is generated from the code and must not be edited by hand.

Files are raised together when their names or formats put them earlier in the work than the files they were suggested as made from, one question for each folder and pair of steps.

stage_disagrees_with_a_derivation version 2+d1

  • Kind of rule: What is raised for attention (flags). Raises something for a person’s attention without concluding anything.

  • What it concludes: a finding

  • Reasoning: defeasible. A conclusion is usually right, and is retracted when a rule it names concludes against it.

  • What it reads: one file at a time

Is it available in this version?#

Yes. The engine runs it.

What would defeat it#

A finding is never withdrawn. When any of these rules also concludes about the same thing, the finding records it:

  • installed_software_in_folder: A folder is recognized as an installed program, such as a copy of Fiji or a Python environment, from the parts it holds, a name ending .app, its program-style subfolders or a majority of program files; its files are still indexed and read, and rules about experiments leave them alone.

It stands aside beneath every folder one of these rules raises:

Parameters#

Parameter

Shipped value

May be

What it does

stage_transitions

{"acquisition": "processed", "analysis": "quantification", "processed": "analysis", "quantification": "summary", "raw": "processed"}

mapping of text to text

Which stage follows which, as the derivations read them.