Process#

This page is generated from the code and must not be edited by hand.

Pipeline stages, transformations, run status and organising units.

Senses: 75
Spellings: 357
Kinds of thing: condition, dataset, experiment, part, position, process, project, quantifier, sample, session, stage, status, subject, timepoint, vessel

Words#

Spelling	Means	Kind	Notes
`AAA`	pooled (`pooled`)	`stage`
`aborted`	aborted (`aborted`)	`status`	also spelled by failed (quality)
`acq`	acquisition (`acquisition`)	`stage`
`acquired`	acquisition (`acquisition`)	`stage`
`acquisition`	acquisition (`acquisition`)	`stage`
`active`	running (`running`)	`status`
`adjusted`	corrected (`corrected`)	`stage`	also spelled by adjusted p value (statistic)
`aggregate`	summary (`summary`)	`stage`
`aggregated`	summary (`summary`)	`stage`
`aligned`	aligned (`aligned`)	`stage`	also spelled by alignment (technique)
`alignment`	aligned (`aligned`)	`stage`
`analysed`	analysis (`analysis`)	`stage`
`analyses`	analysis (`analysis`)	`stage`
`analysis`	analysis (`analysis`)	`stage`
`analytic`	analysis (`analysis`)	`stage`
`analyzed`	analysis (`analysis`)	`stage`
`animal`	subject (`subject`)	`subject`
`animals`	subject (`subject`)	`subject`
`annotated`	annotated (`annotated`)	`stage`
`annotation`	annotated (`annotated`)	`stage`	also spelled by annotation (file_role)
`arm`	group (`group`)	`condition`
`arms`	group (`group`)	`condition`
`as-acquired`	raw (`raw`)	`stage`
`asacquired`	raw (`raw`)	`stage`
`baseline`	baseline (`baseline`)	`condition`
`batch`	batch (`batch`)	`process`
`batches`	batch (`batch`)	`process`
`bin`	binned (`binned`)	`stage`	also spelled by binary data (format), delete (quality)
`binarised`	thresholded (`thresholded`)	`stage`
`binarized`	thresholded (`thresholded`)	`stage`
`binned`	binned (`binned`)	`stage`
`binning`	binned (`binned`)	`stage`	also spelled by binning (technique)
`bulk`	batch (`batch`)	`process`
`bypassed`	skipped (`skipped`)	`status`
`cal`	calibrated (`calibrated`)	`stage`	also spelled by calorie (unit)
`calib`	calibrated (`calibrated`)	`stage`	also spelled by calibration data (file_role)
`calibrated`	calibrated (`calibrated`)	`stage`
`calibration`	calibrated (`calibrated`)	`stage`	also spelled by calibration data (file_role)
`canceled`	aborted (`aborted`)	`status`
`cancelled`	aborted (`aborted`)	`status`
`capture`	acquisition (`acquisition`)	`stage`
`captured`	acquisition (`acquisition`)	`stage`
`carrier`	vehicle (`vehicle`)	`condition`
`catalog`	manifest (`manifest`)	`process`
`catalogue`	manifest (`manifest`)	`process`
`cfg`	configuration (`configuration`)	`process`	also spelled by configuration file (format)
`chamber`	slide (`slide`)	`vessel`
`checksum`	checksum (`checksum`)	`process`
`code`	script (`script`)	`process`
`cohort`	group (`group`)	`condition`
`cohorts`	group (`group`)	`condition`
`combined`	merged (`merged`); pooled (`pooled`)	`stage`	declared ambiguous with pooled (stage); declared ambiguous with merged (stage)
`complete`	complete (`complete`)	`status`
`completed`	complete (`complete`)	`status`
`compressed`	compressed (`compressed`)	`stage`
`concat`	merged (`merged`)	`stage`
`concatenated`	merged (`merged`)	`stage`
`cond`	condition (`condition`)	`condition`
`condition`	condition (`condition`)	`condition`
`conditions`	condition (`condition`)	`condition`
`conf`	configuration (`configuration`)	`process`	also spelled by configuration file (format)
`config`	configuration (`configuration`)	`process`	also spelled by configuration file (format)
`control`	control (`control`)	`condition`
`controls`	control (`control`)	`condition`
`conv`	converted (`converted`)	`stage`
`conversion`	converted (`converted`)	`stage`
`converted`	converted (`converted`)	`stage`
`coregistered`	aligned (`aligned`)	`stage`
`corr`	corrected (`corrected`)	`stage`	also spelled by correlation (statistic)
`corrected`	corrected (`corrected`)	`stage`
`correction`	corrected (`corrected`)	`stage`
`coverslip`	slide (`slide`)	`vessel`
`crop`	cropped (`cropped`)	`stage`
`cropped`	cropped (`cropped`)	`stage`
`cropping`	cropped (`cropped`)	`stage`
`ctl`	control (`control`)	`condition`
`ctrl`	control (`control`)	`condition`
`curated`	annotated (`annotated`)	`stage`
`dag`	pipeline (`pipeline`)	`process`
`data`	dataset (`dataset`)	`dataset`
`dataset`	dataset (`dataset`)	`dataset`
`datasets`	dataset (`dataset`)	`dataset`
`decimated`	downsampled (`downsampled`)	`stage`
`deck`	report (`report`)	`stage`	also spelled by presentation (file_role)
`decon`	deconvolved (`deconvolved`)	`stage`
`deconv`	deconvolved (`deconvolved`)	`stage`
`deconvolution`	deconvolved (`deconvolved`)	`stage`
`deconvolved`	deconvolved (`deconvolved`)	`stage`
`deliverable`	export (`export`)	`stage`
`delivery`	export (`export`)	`stage`
`denoise`	denoised (`denoised`)	`stage`
`denoised`	denoised (`denoised`)	`stage`
`denoising`	denoised (`denoised`)	`stage`
`derived`	analysis (`analysis`)	`stage`
`digest`	checksum (`checksum`)	`process`	also spelled by restriction (technique)
`dish`	slide (`slide`)	`vessel`
`dmso_control`	vehicle (`vehicle`)	`condition`
`done`	complete (`complete`)	`status`
`donor`	subject (`subject`)	`subject`
`donors`	subject (`subject`)	`subject`
`dosed`	treatment (`treatment`)	`condition`
`downsample`	downsampled (`downsampled`)	`stage`
`downsampled`	downsampled (`downsampled`)	`stage`
`ds`	dataset (`dataset`)	`dataset`
`dump`	unaffiliated (`unaffiliated`)	`stage`
`error`	failed run (`failed_run`)	`status`
`errored`	failed run (`failed_run`)	`status`
`excluded`	skipped (`skipped`)	`status`	also spelled by excluded (quality)
`exec`	run (`run`)	`process`
`execution`	run (`run`)	`process`
`exp`	experiment (`experiment`)	`experiment`
`experiment`	experiment (`experiment`)	`experiment`
`experiments`	experiment (`experiment`)	`experiment`
`export`	export (`export`)	`stage`
`exported`	export (`export`)	`stage`
`exports`	export (`export`)	`stage`
`expt`	experiment (`experiment`)	`experiment`
`field-of-view`	position (`position`)	`position`
`filt`	filtered (`filtered`)	`stage`
`filtered`	filtered (`filtered`)	`stage`
`filtered_subset`	subset (`subset`)	`stage`
`filtering`	filtered (`filtered`)	`stage`
`final`	pooled (`pooled`)	`stage`	declared ambiguous with final (version)
`finished`	complete (`complete`)	`status`	also spelled by final (version)
`flask`	slide (`slide`)	`vessel`
`flow`	pipeline (`pipeline`)	`process`	also spelled by flow cytometry (technique)
`fov`	position (`position`)	`position`	also spelled by field of view (acquisition)
`frame`	frame (`frame`)	`part`
`frames`	frame (`frame`)	`part`
`group`	group (`group`)	`condition`
`groups`	group (`group`)	`condition`
`gzipped`	compressed (`compressed`)	`stage`
`hash`	checksum (`checksum`)	`process`
`in-progress`	running (`running`)	`status`
`inbox`	unaffiliated (`unaffiliated`)	`stage`
`incomplete`	partial (`partial`)	`status`	also spelled by todo (quality)
`index`	manifest (`manifest`)	`process`
`inprogress`	running (`running`)	`status`
`interim`	intermediate (`intermediate`)	`stage`
`intermediate`	intermediate (`intermediate`)	`stage`
`interpolated`	upsampled (`upsampled`)	`stage`
`interrupted`	aborted (`aborted`)	`status`
`inventory`	manifest (`manifest`)	`process`	also spelled by inventory file (file_role)
`investigation`	study (`study`)	`experiment`
`job`	job (`job`)	`process`
`jobs`	job (`job`)	`process`
`joined`	merged (`merged`)	`stage`
`journal`	log (`log`)	`process`
`killed`	aborted (`aborted`)	`status`
`labeled`	annotated (`annotated`)	`stage`
`labelled`	annotated (`annotated`)	`stage`
`listing`	manifest (`manifest`)	`process`	also spelled by inventory file (file_role)
`log`	log (`log`)	`process`	also spelled by log file (format), logarithm (statistic)
`logfile`	log (`log`)	`process`
`logs`	log (`log`)	`process`
`macro`	script (`script`)	`process`
`macros`	script (`script`)	`process`
`manifest`	manifest (`manifest`)	`process`
`manuscript`	report (`report`)	`stage`
`mask`	masked (`masked`)	`stage`
`masked`	masked (`masked`)	`stage`
`masking`	masked (`masked`)	`stage`
`masks`	masked (`masked`)	`stage`
`md5`	checksum (`checksum`)	`process`
`measured`	quantification (`quantification`)	`stage`
`measurements`	quantification (`quantification`)	`stage`
`merge`	merged (`merged`)	`stage`
`merged`	merged (`merged`); pooled (`pooled`)	`stage`	declared ambiguous with pooled (stage); declared ambiguous with merged (stage)
`meta-analysis`	pooled (`pooled`)	`stage`
`meta_analysis`	pooled (`pooled`)	`stage`
`metaanalysis`	pooled (`pooled`)	`stage`
`microplate`	plate (`plate`)	`vessel`
`misc`	unaffiliated (`unaffiliated`)	`stage`
`miscellaneous`	unaffiliated (`unaffiliated`)	`stage`
`mock`	control (`control`)	`condition`
`mosaic`	stitched (`stitched`)	`stage`	also spelled by tile (acquisition)
`nb`	notebook (`notebook`)	`process`
`noisereduced`	denoised (`denoised`)	`stage`
`norm`	normalised (`normalised`)	`stage`
`normalisation`	normalised (`normalised`)	`stage`
`normalised`	normalised (`normalised`)	`stage`
`normalization`	normalised (`normalised`)	`stage`
`normalized`	normalised (`normalised`)	`stage`
`notebook`	notebook (`notebook`)	`process`
`notebooks`	notebook (`notebook`)	`process`
`ok`	complete (`complete`)	`status`
`options`	configuration (`configuration`)	`process`
`opts`	configuration (`configuration`)	`process`
`original_data`	raw (`raw`)	`stage`
`other`	unaffiliated (`unaffiliated`)	`stage`
`out`	analysis (`analysis`)	`stage`	also spelled by program output (format)
`output`	analysis (`analysis`)	`stage`
`outputs`	analysis (`analysis`)	`stage`
`packed`	compressed (`compressed`)	`stage`
`paper`	report (`report`)	`stage`
`parameters`	configuration (`configuration`)	`process`
`params`	configuration (`configuration`)	`process`
`partial`	partial (`partial`)	`status`
`passed`	complete (`complete`)	`status`
`pending`	pending (`pending`)	`status`
`pipeline`	pipeline (`pipeline`)	`process`
`plate`	plate (`plate`)	`vessel`
`plates`	plate (`plate`)	`vessel`
`pooled`	pooled (`pooled`)	`stage`
`pooling`	pooled (`pooled`)	`stage`
`pos`	position (`position`)	`position`
`position`	position (`position`)	`position`
`positions`	position (`position`)	`position`	also spelled by multipoint (acquisition)
`poster`	report (`report`)	`stage`	also spelled by presentation (file_role)
`pre`	pre-treatment (`pretreatment`)	`condition`
`pre-processed`	preprocessed (`preprocessed`)	`stage`
`pre-treated`	pre-treatment (`pretreatment`)	`condition`
`pre-treatment`	pre-treatment (`pretreatment`)	`condition`
`prep`	preprocessed (`preprocessed`)	`stage`
`prepped`	preprocessed (`preprocessed`)	`stage`
`preprocessed`	preprocessed (`preprocessed`)	`stage`
`preprocessing`	preprocessed (`preprocessed`)	`stage`
`pretreated`	pre-treatment (`pretreatment`)	`condition`
`pretreatment`	pre-treatment (`pretreatment`)	`condition`
`proc`	processed (`processed`)	`stage`
`processed`	processed (`processed`)	`stage`
`processing`	processed (`processed`)	`stage`
`program`	project (`project`)	`project`
`programme`	project (`project`)	`project`
`proj`	project (`project`); projected (`projected`)	`project`, `stage`	also spelled by projected (stage); also spelled by project (project)
`project`	project (`project`)	`project`
`projected`	projected (`projected`)	`stage`
`projection`	projected (`projected`)	`stage`
`published`	export (`export`)	`stage`
`quant`	quantification (`quantification`)	`stage`
`quantification`	quantification (`quantification`)	`stage`
`quantified`	quantification (`quantification`)	`stage`
`queued`	pending (`pending`)	`status`
`raw`	raw (`raw`)	`stage`	also spelled by binary data (format)
`rawdata`	raw (`raw`)	`stage`
`rawimages`	raw (`raw`)	`stage`
`recorded`	acquisition (`acquisition`)	`stage`
`recording`	acquisition (`acquisition`)	`stage`
`reformatted`	converted (`converted`)	`stage`
`registered`	aligned (`aligned`)	`stage`
`registration`	aligned (`aligned`)	`stage`
`report`	report (`report`)	`stage`
`reports`	report (`report`)	`stage`
`res`	analysis (`analysis`)	`stage`
`rescaled`	resized (`resized`)	`stage`
`resize`	resized (`resized`)	`stage`
`resized`	resized (`resized`)	`stage`
`result`	analysis (`analysis`)	`stage`
`results`	analysis (`analysis`)	`stage`
`rollup`	summary (`summary`)	`stage`
`run`	run (`run`)	`process`
`running`	running (`running`)	`status`
`runs`	run (`run`)	`process`
`sample`	sample (`sample`)	`sample`
`samples`	sample (`sample`)	`sample`
`scaled`	resized (`resized`)	`stage`
`scheduled`	pending (`pending`)	`status`
`scratch_stage`	intermediate (`intermediate`)	`stage`
`script`	script (`script`)	`process`
`scripts`	script (`script`)	`process`
`seg`	segmented (`segmented`)	`stage`
`segment`	segment (`segment`)	`part`
`segmentation`	segmented (`segmented`)	`stage`
`segmented`	segmented (`segmented`)	`stage`
`segments`	segment (`segment`)	`part`
`selected`	subset (`subset`)	`stage`
`selection`	subset (`subset`)	`stage`	also spelled by selection (reagent)
`session`	session (`session`)	`session`
`sessions`	session (`session`)	`session`
`settings`	configuration (`configuration`)	`process`
`sha1`	checksum (`checksum`)	`process`
`sha256`	checksum (`checksum`)	`process`
`sham`	control (`control`)	`condition`
`shared`	export (`export`)	`stage`
`single`	single (`single`)	`quantifier`
`site`	position (`position`)	`position`
`sites`	position (`position`)	`position`	also spelled by multipoint (acquisition)
`sitting`	session (`session`)	`session`
`skip`	skipped (`skipped`)	`status`
`skipped`	skipped (`skipped`)	`status`
`slide`	slide (`slide`)	`vessel`
`slides`	report (`report`); slide (`slide`)	`stage`, `vessel`	also spelled by presentation (file_role), slide (vessel); also spelled by presentation (file_role), report (stage)
`smooth`	smoothed (`smoothed`)	`stage`
`smoothed`	smoothed (`smoothed`)	`stage`
`smoothing`	smoothed (`smoothed`)	`stage`
`spec`	sample (`sample`)	`sample`	also spelled by schema (file_role)
`specimen`	sample (`sample`)	`sample`
`specimens`	sample (`sample`)	`sample`
`staging`	intermediate (`intermediate`)	`stage`
`stderr`	log (`log`)	`process`	also spelled by error output (format), standard error (statistic)
`stdout`	log (`log`)	`process`
`stitch`	stitched (`stitched`)	`stage`
`stitched`	stitched (`stitched`)	`stage`
`stitching`	stitched (`stitched`)	`stage`
`stopped`	aborted (`aborted`)	`status`
`studies`	study (`study`)	`experiment`
`study`	study (`study`)	`experiment`
`subject`	subject (`subject`)	`subject`
`subjects`	subject (`subject`)	`subject`
`subsampled`	downsampled (`downsampled`)	`stage`
`subset`	subset (`subset`)	`stage`
`success`	complete (`complete`)	`status`
`summaries`	summary (`summary`)	`stage`
`summarised`	summary (`summary`)	`stage`
`summarized`	summary (`summary`)	`stage`
`summary`	summary (`summary`)	`stage`
`t0`	baseline (`baseline`)	`condition`
`task`	job (`job`)	`process`
`tasks`	job (`job`)	`process`
`thresh`	thresholded (`thresholded`)	`stage`
`threshold`	thresholded (`thresholded`)	`stage`	also spelled by threshold (statistic)
`thresholded`	thresholded (`thresholded`)	`stage`
`time-point`	timepoint (`timepoint`)	`timepoint`
`timecourse`	timepoint (`timepoint`)	`timepoint`
`timepoint`	timepoint (`timepoint`)	`timepoint`
`timepoints`	timepoint (`timepoint`)	`timepoint`
`timeseries`	timepoint (`timepoint`)	`timepoint`	also spelled by time series (acquisition)
`timezero`	baseline (`baseline`)	`condition`
`todo`	pending (`pending`)	`status`	also spelled by todo (quality)
`tp`	timepoint (`timepoint`)	`timepoint`	also spelled by confusion matrix (statistic), time series (acquisition)
`trace`	log (`log`)	`process`	also spelled by protocol step (acquisition)
`track`	analysis (`analysis`)	`stage`
`tracked`	analysis (`analysis`)	`stage`
`tracking`	analysis (`analysis`)	`stage`	also spelled by single particle tracking (technique)
`tracks`	analysis (`analysis`)	`stage`
`trajectories`	analysis (`analysis`)	`stage`	also spelled by single particle tracking (technique)
`transcoded`	converted (`converted`)	`stage`
`treat`	treatment (`treatment`)	`condition`
`treated`	treatment (`treatment`)	`condition`
`treatment`	treatment (`treatment`)	`condition`
`treatments`	treatment (`treatment`)	`condition`
`trimmed`	cropped (`cropped`)	`stage`	also spelled by trimming (technique)
`truncated`	partial (`partial`)	`status`
`tube`	slide (`slide`)	`vessel`
`unfiled`	unaffiliated (`unaffiliated`)	`stage`
`unfinished`	partial (`partial`)	`status`	also spelled by todo (quality)
`unprocessed`	raw (`raw`)	`stage`
`unsorted`	unaffiliated (`unaffiliated`)	`stage`
`untouched`	raw (`raw`)	`stage`
`untreated`	control (`control`)	`condition`
`upsample`	upsampled (`upsampled`)	`stage`
`upsampled`	upsampled (`upsampled`)	`stage`
`veh`	vehicle (`vehicle`)	`condition`
`vehicle`	vehicle (`vehicle`)	`condition`
`vial`	slide (`slide`)	`vessel`
`waiting`	pending (`pending`)	`status`
`well`	well (`well`)	`vessel`
`wellplate`	plate (`plate`)	`vessel`
`wells`	well (`well`)	`vessel`
`wild-type`	wild type (`wild_type`)	`condition`
`wildtype`	wild type (`wild_type`)	`condition`
`workflow`	pipeline (`pipeline`)	`process`
`working`	intermediate (`intermediate`)	`stage`
`write-up`	report (`report`)	`stage`
`writeup`	report (`report`)	`stage`
`wt`	wild type (`wild_type`)	`condition`
`zipped`	compressed (`compressed`)	`stage`